with_AGI_gene
OMAT4P000120
<html><body><title>OMAT4P000120</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400001200000i/OMAT4P000120.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400001200000i/OMAT4P000120.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400001200000i/OMAT4P000120.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500108700000i">OMAT5P010870</a></td><td>0.947293</td><td>-</td><td>AT5G40140</td><td>armadillo/beta-catenin repeat family protein / U-box domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100233600000i">OMAT1P023360</a></td><td>0.903283</td><td>-</td><td>AT1G78490</td><td>CYP708A3</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500135200000i">OMAT5P013520</a></td><td>0.902506</td><td>-</td><td>AT5G47690</td><td>binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300093200000i">OMAT3P009320</a></td><td>0.900796</td><td>-</td><td>AT3G24760</td><td>F-box family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200088300000i">OMAT2P008830</a></td><td>0.896559</td><td>-</td><td>AT2G35340</td><td>MEE29 (maternal effect embryo arrest 29)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500181650000i">OMAT5P018165</a></td><td>0.894535</td><td>-</td><td>AT5G59670</td><td>leucine-rich repeat protein kinase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400000100000i">OMAT4P000010</a></td><td>0.890292</td><td>-</td><td>AT4G00040</td><td>chalcone and stilbene synthase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501182500000i">OMAT5P118250</a></td><td>0.888314</td><td>-</td><td>AT5G66320</td><td>zinc finger (GATA type) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401086200000i">OMAT4P108620</a></td><td>0.885027</td><td>-</td><td>AT4G30520</td><td>leucine-rich repeat family protein / protein kinase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100140400000i">OMAT1P014040</a></td><td>0.880864</td><td>-</td><td>AT1G50950</td><td>thioredoxin-related</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101153000000i">OMAT1P115300</a></td><td>-0.728797</td><td>-</td><td>AT1G62510</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401039400000i">OMAT4P103940</a></td><td>-0.670254</td><td>-</td><td>AT4G16500</td><td>cysteine protease inhibitor family protein / cystatin family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200045800000i">OMAT2P004580</a></td><td>-0.646403</td><td>-</td><td>AT2G23120</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401047400000i">OMAT4P104740</a></td><td>-0.635929</td><td>-</td><td>AT4G18740</td><td>transcription termination factor</td><td>AT4G18730</td><td>RPL16B</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101050400000i">OMAT1P105040</a></td><td>-0.630023</td><td>-</td><td>AT1G15175</td><td>other RNA</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101100000i">OMAT4P110110</a></td><td>-0.62879</td><td>-</td><td>AT4G34620</td><td>SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401077700000i">OMAT4P107770</a></td><td>-0.613073</td><td>-</td><td>AT4G27950</td><td>CRF4 (CYTOKININ RESPONSE FACTOR 4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501126300000i">OMAT5P112630</a></td><td>-0.611177</td><td>-</td><td>-</td><td>-</td><td>AT5G49480</td><td>ATCP1 (Ca2+-binding protein 1)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501180400000i">OMAT5P118040</a></td><td>-0.604816</td><td>-</td><td>-</td><td>-</td><td>AT5G65610</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501018900000i">OMAT5P101890</a></td><td>-0.60446</td><td>-</td><td>AT5G07000</td><td>ST2B (SULFOTRANSFERASE 2B)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400001200000i/OMAT4P000120-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.59e-20</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.59e-20 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0050789</td><td>regulation of biological process</td><td>39/200</td><td>2.25</td><td>4.59e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0010468</td><td>regulation of gene expression</td><td>28/200</td><td>2.63</td><td>9.63e-07</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=regulation%20gene%20expression">1.01E-15</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0060255</td><td>regulation of macromolecule metabolic process</td><td>28/200</td><td>2.56</td><td>1.64e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0019222</td><td>regulation of metabolic process</td><td>29/200</td><td>2.46</td><td>2.35e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>31/200</td><td>2.06</td><td>4.00e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0080090</td><td>regulation of primary metabolic process</td><td>24/200</td><td>2.28</td><td>5.63e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0019219</td><td>regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>23/200</td><td>2.29</td><td>7.05e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0051171</td><td>regulation of nitrogen compound metabolic process</td><td>23/200</td><td>2.27</td><td>8.24e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006350</td><td>transcription</td><td>23/200</td><td>2.25</td><td>9.27e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=transcription">9.51E-14</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0050794</td><td>regulation of cellular process</td><td>30/200</td><td>1.97</td><td>1.26e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010556</td><td>regulation of macromolecule biosynthetic process</td><td>22/200</td><td>2.23</td><td>1.45e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>32/200</td><td>1.90</td><td>1.53e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009889</td><td>regulation of biosynthetic process</td><td>22/200</td><td>2.19</td><td>1.92e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0031326</td><td>regulation of cellular biosynthetic process</td><td>22/200</td><td>2.19</td><td>1.92e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0031323</td><td>regulation of cellular metabolic process</td><td>23/200</td><td>2.13</td><td>2.21e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>19/200</td><td>2.23</td><td>3.66e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>16/200</td><td>2.41</td><td>3.96e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>16/200</td><td>2.41</td><td>4.00e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>34/200</td><td>1.75</td><td>4.59e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>34/200</td><td>1.71</td><td>6.54e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>51/200</td><td>1.45</td><td>1.90e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>54/200</td><td>1.40</td><td>3.16e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>12/200</td><td>2.19</td><td>3.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>32/200</td><td>1.57</td><td>3.73e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=gene%20expression">1.77E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>20/200</td><td>1.76</td><td>4.95e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>11/200</td><td>2.10</td><td>6.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>12/200</td><td>2.03</td><td>6.85e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006464</td><td>protein modification process</td><td>18/200</td><td>1.73</td><td>8.56e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005886</td><td>plasma membrane</td><td>22/200</td><td>1.78</td><td>3.19e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=plasma%20membrane">3.64E-21</a></td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0003676</td><td>nucleic acid binding</td><td>46/200</td><td>1.94</td><td>3.01e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0003677</td><td>DNA binding</td><td>31/200</td><td>2.24</td><td>7.96e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=binding">0</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016818</td><td>hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides</td><td>13/200</td><td>2.92</td><td>1.70e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016817</td><td>hydrolase activity, acting on acid anhydrides</td><td>13/200</td><td>2.89</td><td>1.88e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0005515</td><td>protein binding</td><td>30/200</td><td>1.92</td><td>1.98e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=protein%20binding">0</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003700</td><td>transcription factor activity</td><td>22/200</td><td>2.18</td><td>2.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016772</td><td>transferase activity, transferring phosphorus-containing groups</td><td>19/200</td><td>2.07</td><td>9.35e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016301</td><td>kinase activity</td><td>17/200</td><td>2.11</td><td>1.27e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=kinase%20activity">3.95E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0000166</td><td>nucleotide binding</td><td>23/200</td><td>1.74</td><td>3.40e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022892</td><td>substrate-specific transporter activity</td><td>11/200</td><td>2.13</td><td>6.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0030554</td><td>adenyl nucleotide binding</td><td>16/200</td><td>1.77</td><td>9.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0001883</td><td>purine nucleoside binding</td><td>16/200</td><td>1.77</td><td>9.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0001882</td><td>nucleoside binding</td><td>16/200</td><td>1.76</td><td>9.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016773</td><td>phosphotransferase activity, alcohol group as acceptor</td><td>12/200</td><td>1.93</td><td>9.97e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>153/200</td><td>1.97</td><td>3.39e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>155/200</td><td>1.93</td><td>8.55e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>151/200</td><td>1.83</td><td>1.19e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>152/200</td><td>1.80</td><td>4.23e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>145/200</td><td>1.88</td><td>4.76e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>148/200</td><td>1.82</td><td>2.07e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>154/200</td><td>1.76</td><td>2.11e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>152/200</td><td>1.77</td><td>4.48e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>157/200</td><td>1.70</td><td>1.48e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>148/200</td><td>1.76</td><td>8.15e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>152/200</td><td>1.72</td><td>9.12e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>155/200</td><td>1.69</td><td>1.59e-20</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=leaf">9.51E-14</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>157/200</td><td>1.66</td><td>1.87e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>157/200</td><td>1.66</td><td>1.87e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>157/200</td><td>1.62</td><td>3.55e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>158/200</td><td>1.61</td><td>3.90e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>158/200</td><td>1.61</td><td>7.33e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>158/200</td><td>1.61</td><td>7.33e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>150/200</td><td>1.67</td><td>1.35e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>144/200</td><td>1.72</td><td>1.61e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>161/200</td><td>1.57</td><td>1.82e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>136/200</td><td>1.79</td><td>2.28e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>141/200</td><td>1.70</td><td>2.34e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>162/200</td><td>1.49</td><td>4.91e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>158/200</td><td>1.52</td><td>5.75e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>158/200</td><td>1.51</td><td>1.15e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>144/200</td><td>1.60</td><td>2.51e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>125/200</td><td>1.70</td><td>3.66e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>49/200</td><td>1.51</td><td>9.30e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>49/200</td><td>1.51</td><td>9.30e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0005679</td><td>epidermis</td><td>22/200</td><td>1.78</td><td>3.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009014</td><td>dermal tissue</td><td>22/200</td><td>1.78</td><td>3.19e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0004013</td><td>epidermal cell</td><td>21/200</td><td>1.76</td><td>4.21e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0006016</td><td>leaf epidermis</td><td>19/200</td><td>1.71</td><td>8.22e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0006035</td><td>shoot epidermis</td><td>19/200</td><td>1.70</td><td>8.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>146/200</td><td>1.90</td><td>6.55e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>146/200</td><td>1.90</td><td>6.98e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>148/200</td><td>1.86</td><td>1.63e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>151/200</td><td>1.82</td><td>2.73e-23</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>150/200</td><td>1.83</td><td>3.13e-23</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>157/200</td><td>1.74</td><td>6.36e-23</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>157/200</td><td>1.74</td><td>1.09e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>149/200</td><td>1.81</td><td>2.17e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>147/200</td><td>1.75</td><td>4.07e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>147/200</td><td>1.75</td><td>4.17e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>147/200</td><td>1.74</td><td>8.92e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>161/200</td><td>1.58</td><td>8.13e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>156/200</td><td>1.61</td><td>2.17e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>157/200</td><td>1.59</td><td>4.60e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>161/200</td><td>1.54</td><td>2.42e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>46/200</td><td>1.57</td><td>5.72e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>regulation</td><td>-</td><td>29/200</td><td>2.19</td><td>2.22e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=regulation">1.97E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transcription</td><td>-</td><td>29/200</td><td>2.00</td><td>1.23e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=transcription">9.51E-14</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>16/200</td><td>2.60</td><td>1.62e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=phosphorylation">5.50E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>plasma</td><td>-</td><td>24/200</td><td>2.09</td><td>2.11e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=plasma">3.64E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr000719</td><td>-</td><td>15/200</td><td>2.41</td><td>5.69e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>factor</td><td>-</td><td>31/200</td><td>1.77</td><td>6.35e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=factor">2.00E-23</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>16/200</td><td>2.29</td><td>6.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>33/200</td><td>1.71</td><td>7.91e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=terminal">6.83E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr011009</td><td>-</td><td>15/200</td><td>2.32</td><td>8.41e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleic</td><td>-</td><td>15/200</td><td>2.29</td><td>9.44e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>amino</td><td>-</td><td>18/200</td><td>2.09</td><td>1.10e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=amino">1.80E-15</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>motif</td><td>-</td><td>12/200</td><td>2.47</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr008271</td><td>-</td><td>12/200</td><td>2.46</td><td>1.35e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017441</td><td>-</td><td>11/200</td><td>2.56</td><td>1.37e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>superfamily</td><td>-</td><td>10/200</td><td>2.64</td><td>1.61e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>threonine</td><td>-</td><td>15/200</td><td>2.00</td><td>3.73e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=threonine">1.92E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>serine</td><td>-</td><td>17/200</td><td>1.91</td><td>3.80e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=serine">3.52E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleotide</td><td>-</td><td>13/200</td><td>2.04</td><td>5.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>14/200</td><td>1.93</td><td>6.56e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=transmembrane">1.77E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leucine</td><td>-</td><td>11/200</td><td>2.10</td><td>6.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>11/200</td><td>2.09</td><td>7.04e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>function</td><td>-</td><td>25/200</td><td>1.60</td><td>7.10e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=function">2.46E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>18/200</td><td>1.71</td><td>9.82e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G00340&keyword=kinase">0</a></td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
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